SNP Profiles matching IMC 54

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	GT	CT	GG	AC	CC	AG	TT	AG	GG	AA	CC
1._RUQ_1633	TT	CC	CC	GT	CT	GG	AC	CC	AG	TT	AG	GG	AA	CC
2._IMC_54	_	_	CC	GT	CT	_	AA	CC	AG	TT	_	_	AA	_
3._IMC_54	_	_	CC	GT	CT	_	AA	CC	AG	TT	_	_	AA	_
4._IMC_54	_	_	CC	GT	CT	_	AA	CC	AG	TT	_	_	AA	_
5._IMC_54	_	_	CC	GT	CT	_	AA	CC	AG	TT	_	_	AA	_
6._IMC_54	_	_	CC	GT	CT	_	AA	CC	AG	TT	_	_	AA	_
7._RUQ_11	_	_	_	GT	CT	_	AC	CC	AG	CT	_	_	AA	_
8._GC-04-018-1-18	TT	CC	CC	GT	CT	GG	AA	CC	AG	TT	AG	GG	AA	CC
9._GC-04-018-1-18	TT	CC	CC	GT	CT	GG	AA	CC	AG	TT	AG	GG	AA	CC
10._GC-04-018-1-18	TT	CC	CC	GT	CT	GG	AA	CC	AG	TT	AG	GG	AA	CC
11._GC-04-018-1-18	TT	CC	CC	GT	CT	GG	AA	CC	AG	TT	AG	GG	AA	CC
12._GC-04-018-1-18	TT	CC	CC	GT	CT	GG	AA	CC	AG	TT	AG	GG	AA	_
13._IMC_47	_	_	CC	GT	CT	_	AC	_	AG	TT	_	_	AA	_
14._IMC_96	_	_	CC	GT	CC	_	AC	_	AG	CT	_	_	AA	_
15._IMC_96	_	_	CC	GT	CC	_	AC	_	AG	CT	_	_	AA	_
16._RUQ_8	TT	CC	AC	GT	CT	GG	AC	CG	AG	TT	AG	GG	AA	CC
17._RUQ_1634	TT	CC	AC	GT	CT	GG	AC	CG	AG	TT	AG	GG	AA	CC
18._RUQ_861	TT	CC	CC	GT	CT	GG	AC	CG	AG	CT	AA	GG	AA	CC
19._RUQ_761	TT	CC	AC	GT	CT	GG	AC	CG	AG	TT	AG	GG	AA	CC
20._RUQ_936	TT	CC	AC	TT	CT	GG	AC	CC	AG	TT	AG	GG	AA	CC
21._RUQ_734	TT	CC	AC	GT	CT	GG	AC	CC	AG	TT	AG	GG	AA	CC
22._RUQ_1676	TT	CC	CC	TT	CT	GG	AC	GG	AG	CT	AG	GG	AA	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	CT	GT	GG	AA	CC	CC	TT	GG	GG	TT	AC	CC
1._RUQ_1633	AA	CC	CT	GT	GG	AA	CC	CC	TT	GG	GG	TT	AC	CC
2._IMC_54	AA	CC	CT	GT	GG	AA	_	CC	_	GG	_	_	_	CC
3._IMC_54	AA	CC	CT	GT	GG	AA	_	CC	_	GG	_	_	_	CC
4._IMC_54	AA	CC	CT	GT	GG	AA	_	CC	_	GG	_	_	_	CC
5._IMC_54	AA	CC	CT	GT	GG	AA	_	CC	_	GG	_	_	_	CC
6._IMC_54	AA	CC	CT	GT	GG	AA	_	CC	_	GG	_	_	_	CC
7._RUQ_11	AA	CC	CT	GT	GG	AA	_	CC	_	GG	_	_	_	CC
8._GC-04-018-1-18	AA	CC	CT	GT	GG	AA	CC	CC	CC	GG	GG	TT	AC	CC
9._GC-04-018-1-18	AA	CC	CT	GT	GG	AA	CC	CC	CC	GG	GG	TT	AC	CC
10._GC-04-018-1-18	AA	CC	CT	GT	GG	AA	CC	CC	CC	GG	GG	TT	AC	CC
11._GC-04-018-1-18	AA	CC	CT	GT	GG	AA	CC	CC	CC	GG	GG	TT	AC	CC
12._GC-04-018-1-18	AA	CC	CT	GT	GG	AA	CC	CC	CC	GG	GG	TT	AC	CC
13._IMC_47	AA	CC	CT	GT	GG	AA	_	CC	_	GG	_	_	_	CC
14._IMC_96	AA	CC	CT	GT	GG	_	_	CC	_	GG	_	_	_	CC
15._IMC_96	AA	CC	CT	GT	GG	_	_	CC	_	GG	_	_	_	CC
16._RUQ_8	AA	CC	CT	GG	GG	AA	CC	CC	TT	GG	GG	TT	AC	CC
17._RUQ_1634	AA	CC	CT	GG	GG	AA	CC	CC	TT	GG	GG	TT	AC	CC
18._RUQ_861	AA	CC	CT	GT	GG	AA	CT	CC	TT	GG	GG	TT	AC	CC
19._RUQ_761	AA	CC	CT	GG	GG	AA	CC	CC	TT	GG	GG	TT	AC	CC
20._RUQ_936	AA	CC	CT	GG	GG	AA	CT	CC	TT	GG	GG	TT	AA	CC
21._RUQ_734	AA	AC	CC	GG	GG	AC	CT	CC	TT	GG	GG	TT	AC	CC
22._RUQ_1676	AA	CC	CT	GT	GG	AA	CC	CC	TT	GG	GG	TT	AC	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	TT	AA	CC	CT	GG	GG	TT	TT	CT	CC	TT	CG	AG
1._RUQ_1633	CC	TT	AA	CC	CT	GG	GG	TT	TT	CT	CC	TT	CG	AG
2._IMC_54	_	CT	AA	_	CT	_	_	_	TT	_	_	TT	CG	AG
3._IMC_54	_	CT	AA	_	CT	_	_	_	TT	_	_	TT	CG	AG
4._IMC_54	_	CT	AA	_	CT	_	_	_	TT	_	_	TT	CG	AG
5._IMC_54	_	CT	AA	_	CT	_	_	_	TT	_	_	TT	CG	AG
6._IMC_54	_	CT	AA	_	CT	_	_	_	TT	_	_	TT	CG	AG
7._RUQ_11	_	CT	AA	_	CT	_	_	_	TT	_	_	_	CG	AG
8._GC-04-018-1-18	CC	CT	AA	CC	CT	GG	GG	TT	TT	TT	CC	TT	CG	AG
9._GC-04-018-1-18	CC	CT	AA	CC	CT	GG	GG	TT	TT	TT	CC	TT	CG	AG
10._GC-04-018-1-18	CC	CT	AA	CC	CT	GG	GG	TT	TT	TT	CC	TT	CG	AG
11._GC-04-018-1-18	CC	CT	AA	CC	CT	GG	GG	TT	TT	TT	CC	TT	CG	AG
12._GC-04-018-1-18	CC	CT	AA	CC	CT	GG	GG	TT	TT	TT	CC	TT	CG	AG
13._IMC_47	_	CT	AA	_	CT	_	_	_	GT	_	_	TT	GG	AG
14._IMC_96	_	CT	AA	_	CT	_	_	_	TT	_	_	TT	CG	AG
15._IMC_96	_	CT	AA	_	CT	_	_	_	TT	_	_	TT	CG	AG
16._RUQ_8	CC	CC	AA	CC	CT	GG	GG	TT	GT	TT	CC	TT	CG	AG
17._RUQ_1634	CC	CC	AA	CC	CT	GG	GG	TT	GT	TT	CC	TT	CG	AG
18._RUQ_861	CC	CC	AA	CC	CT	GG	GG	TT	GT	CT	CC	TT	CG	AG
19._RUQ_761	CC	CC	AA	CC	CT	GG	GG	TT	GT	TT	CC	TT	CG	AG
20._RUQ_936	CC	CC	AA	CC	CT	GG	GG	TT	TT	TT	CC	TT	CG	AG
21._RUQ_734	CC	TT	AA	CC	CC	GG	GG	TT	TT	CT	CC	TT	GG	AG
22._RUQ_1676	CC	TT	AA	CC	CC	GG	GG	TT	GG	TT	CC	TT	CG	AG

Input profile: IMC_54 RUQ_11

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._IMC_58 RUQ_1633

identical
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._IMC_54

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4118 6 > FP

Dapeng Zhang, 2016

3._IMC_54

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4118 5 > FP

Dapeng Zhang, 2016

4._IMC_54

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4118 4 > FP

Dapeng Zhang, 2016

5._IMC_54

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4118 3 > FP

Dapeng Zhang, 2016

6._IMC_54

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4118 7

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._IMC_54 RUQ_11

95.5 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

8._IMC_54 GC-04-018-1-18

94 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

9._IMC_54 GC-04-018-1-18

94 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP2

10._IMC_54 GC-04-018-1-18

94 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP1

11._IMC_54 GC-04-018-1-18

94 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

12._IMC_54 GC-04-018-1-18

93.9 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

13._IMC_47

93.5 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D242

Dapeng Zhang, 2016

14._IMC_96

93.2 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B A46 T2

Dapeng Zhang, 2016

15._IMC_96

93.2 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D562

Dapeng Zhang, 2016

16._IMC_11 RUQ_8

91.7 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

17._IMC_14 RUQ_1634

91.7 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

18._IMC_16 RUQ_861

91.7 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

19._IMC_6 RUQ_761

91.7 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

20._CERRO_AZUL_10 RUQ_936

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

21._IMC_71 RUQ_734

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

22._LP_4_/20_[POU] RUQ_1676

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484